CNV effect on FC

Chr 1

In [4]:
CNV_p = root_p / 'cc_DEL1q21_1_mc.tsv'
nlp.view_img(CNV_brain_img, threshold=0.1, vmax=1, title="DEL1q21_1",cmap=plt.cm.seismic)
Out[4]:
In [5]:
CNV_p = root_p / 'cc_DUP1q21_1_mc.tsv'
nlp.view_img(CNV_brain_img, threshold=0.1, vmax=1, title="DUP1q21_1",cmap=plt.cm.seismic)
Out[5]:
In [6]:
CNV_p = root_p / 'cc_TAR_dup_mc.tsv'
nlp.view_img(CNV_brain_img, threshold=0.1, vmax=1, title="DUP TAR",cmap=plt.cm.seismic)
Out[6]:

Chr 2

In [7]:
CNV_p = root_p / 'cc_DEL2q13_mc.tsv'
nlp.view_img(CNV_brain_img, threshold=0.03, vmax=1, title="DEL 2q13",cmap=plt.cm.seismic)
Out[7]:
In [8]:
CNV_p = root_p / 'cc_DUP2q13_mc.tsv'
nlp.view_img(CNV_brain_img, threshold=0.08, vmax=1, title="DUP 2q13",cmap=plt.cm.seismic)
Out[8]:
In [9]:
CNV_p = root_p / 'cc_NRXN1del_mc.tsv'
nlp.view_img(CNV_brain_img, threshold=0.1, vmax=1, title="DEL NRXN1",cmap=plt.cm.seismic)
Out[9]:

Chr 13

In [10]:
CNV_p = root_p / 'cc_DEL13q12_12_mc.tsv'
nlp.view_img(CNV_brain_img, threshold=0.1, vmax=1, title="DEL 13q12.12",cmap=plt.cm.seismic)
Out[10]:
In [12]:
CNV_p = root_p / 'cc_DUP13q12_12_mc.tsv'
nlp.view_img(CNV_brain_img, threshold=0.09, vmax=1, title="DUP 13q12.12",cmap=plt.cm.seismic)
Out[12]:

Chr 15

In [13]:
CNV_p = root_p / 'cc_DEL15q11_2_mc.tsv'
nlp.view_img(CNV_brain_img, threshold=0.05, vmax=1, title="DEL 15q11.2",cmap=plt.cm.seismic)
Out[13]:
In [14]:
CNV_p = root_p / 'cc_DUP15q11_2_mc.tsv'
nlp.view_img(CNV_brain_img, threshold=0.05, vmax=1, title="DUP 15q11.2",cmap=plt.cm.seismic)

/Users/Clara/anaconda3/lib/python3.6/site-packages/nilearn/reporting/html_document.py:60: UserWarning: It seems you have created more than 10 nilearn views. As each view uses dozens of megabytes of RAM, you might want to delete some of them.
  MAX_IMG_VIEWS_BEFORE_WARNING))
Out[14]:
In [15]:
CNV_p = root_p / 'cc_DUP15q13_3_CHRNA7_mc.tsv'
nlp.view_img(CNV_brain_img, threshold=0.05, vmax=1, title="DUP 15q13_3",cmap=plt.cm.seismic)

/Users/Clara/anaconda3/lib/python3.6/site-packages/nilearn/reporting/html_document.py:60: UserWarning: It seems you have created more than 10 nilearn views. As each view uses dozens of megabytes of RAM, you might want to delete some of them.
  MAX_IMG_VIEWS_BEFORE_WARNING))
Out[15]:

Chr 16

In [16]:
CNV_p = root_p / 'cc_DEL16p11_2_mc.tsv'
nlp.view_img(CNV_brain_img, threshold=0.1, vmax=1, title="DEL 16p11.2",cmap=plt.cm.seismic)

/Users/Clara/anaconda3/lib/python3.6/site-packages/nilearn/reporting/html_document.py:60: UserWarning: It seems you have created more than 10 nilearn views. As each view uses dozens of megabytes of RAM, you might want to delete some of them.
  MAX_IMG_VIEWS_BEFORE_WARNING))
Out[16]:
In [17]:
CNV_p = root_p / 'cc_DUP16p11_2_mc.tsv'
nlp.view_img(CNV_brain_img, threshold=0.08, vmax=1, title="DUP 16p11.2",cmap=plt.cm.seismic)

/Users/Clara/anaconda3/lib/python3.6/site-packages/nilearn/reporting/html_document.py:60: UserWarning: It seems you have created more than 10 nilearn views. As each view uses dozens of megabytes of RAM, you might want to delete some of them.
  MAX_IMG_VIEWS_BEFORE_WARNING))
Out[17]:
In [18]:
CNV_p = root_p / 'cc_DEL16p13_11_mc.tsv'
nlp.view_img(CNV_brain_img, threshold=0.08, vmax=1, title="DEL 16p13.11",cmap=plt.cm.seismic)

/Users/Clara/anaconda3/lib/python3.6/site-packages/nilearn/reporting/html_document.py:60: UserWarning: It seems you have created more than 10 nilearn views. As each view uses dozens of megabytes of RAM, you might want to delete some of them.
  MAX_IMG_VIEWS_BEFORE_WARNING))
Out[18]:
In [19]:
CNV_p = root_p / 'cc_DUP16p13_11_mc.tsv'
nlp.view_img(CNV_brain_img, threshold=0.08, vmax=1, title="DUP 16p13.11",cmap=plt.cm.seismic)

/Users/Clara/anaconda3/lib/python3.6/site-packages/nilearn/reporting/html_document.py:60: UserWarning: It seems you have created more than 10 nilearn views. As each view uses dozens of megabytes of RAM, you might want to delete some of them.
  MAX_IMG_VIEWS_BEFORE_WARNING))
Out[19]:

Chr 17

In [20]:
CNV_p = root_p / 'cc_DEL17p12_mc.tsv'
nlp.view_img(CNV_brain_img, threshold=0.1, vmax=1, title="DEL 17p12",cmap=plt.cm.seismic)

/Users/Clara/anaconda3/lib/python3.6/site-packages/nilearn/reporting/html_document.py:60: UserWarning: It seems you have created more than 10 nilearn views. As each view uses dozens of megabytes of RAM, you might want to delete some of them.
  MAX_IMG_VIEWS_BEFORE_WARNING))
Out[20]:
In [21]:
CNV_p = root_p / 'cc_DUP17p12_mc.tsv'
nlp.view_img(CNV_brain_img, threshold=0.1, vmax=1, title="DUP 17p12",cmap=plt.cm.seismic)

/Users/Clara/anaconda3/lib/python3.6/site-packages/nilearn/reporting/html_document.py:60: UserWarning: It seems you have created more than 10 nilearn views. As each view uses dozens of megabytes of RAM, you might want to delete some of them.
  MAX_IMG_VIEWS_BEFORE_WARNING))
Out[21]:

Chr 22

In [22]:
CNV_p = root_p / 'cc_DEL22q11_2_mc.tsv'
nlp.view_img(CNV_brain_img, threshold=0.1, vmax=1, title="DEL 22q11.2",cmap=plt.cm.seismic)

/Users/Clara/anaconda3/lib/python3.6/site-packages/nilearn/reporting/html_document.py:60: UserWarning: It seems you have created more than 10 nilearn views. As each view uses dozens of megabytes of RAM, you might want to delete some of them.
  MAX_IMG_VIEWS_BEFORE_WARNING))
Out[22]:
In [23]:
CNV_p = root_p / 'cc_DUP22q11_2_mc.tsv'
nlp.view_img(CNV_brain_img, threshold=0.1, vmax=1, title="DUP 22q11.2",cmap=plt.cm.seismic)

/Users/Clara/anaconda3/lib/python3.6/site-packages/nilearn/reporting/html_document.py:60: UserWarning: It seems you have created more than 10 nilearn views. As each view uses dozens of megabytes of RAM, you might want to delete some of them.
  MAX_IMG_VIEWS_BEFORE_WARNING))
Out[23]:

Idiopathic psychiatric conditions

In [24]:
CNV_p = root_p / 'cc_ASD_mc.tsv'
nlp.view_img(CNV_brain_img, threshold=0.07, vmax=1, title="ASD",cmap=plt.cm.seismic)

/Users/Clara/anaconda3/lib/python3.6/site-packages/nilearn/reporting/html_document.py:60: UserWarning: It seems you have created more than 10 nilearn views. As each view uses dozens of megabytes of RAM, you might want to delete some of them.
  MAX_IMG_VIEWS_BEFORE_WARNING))
Out[24]:
In [25]:
CNV_p = root_p / 'cc_SZ_mc.tsv'
nlp.view_img(CNV_brain_img, threshold=0.07, vmax=1, title="Schizophrenia",cmap=plt.cm.seismic)

/Users/Clara/anaconda3/lib/python3.6/site-packages/nilearn/reporting/html_document.py:60: UserWarning: It seems you have created more than 10 nilearn views. As each view uses dozens of megabytes of RAM, you might want to delete some of them.
  MAX_IMG_VIEWS_BEFORE_WARNING))
Out[25]:
In [26]:
CNV_p = root_p / 'cc_BIP_mc.tsv'
nlp.view_img(CNV_brain_img, threshold=0.07, vmax=1, title="Bipolar",cmap=plt.cm.seismic)

/Users/Clara/anaconda3/lib/python3.6/site-packages/nilearn/reporting/html_document.py:60: UserWarning: It seems you have created more than 10 nilearn views. As each view uses dozens of megabytes of RAM, you might want to delete some of them.
  MAX_IMG_VIEWS_BEFORE_WARNING))
Out[26]:
In [27]:
CNV_p = root_p / 'cc_ADHD_mc.tsv'
nlp.view_img(CNV_brain_img, threshold=0.05, vmax=1, title="ADHD",cmap=plt.cm.seismic)

/Users/Clara/anaconda3/lib/python3.6/site-packages/nilearn/reporting/html_document.py:60: UserWarning: It seems you have created more than 10 nilearn views. As each view uses dozens of megabytes of RAM, you might want to delete some of them.
  MAX_IMG_VIEWS_BEFORE_WARNING))
Out[27]:

Polygenic scores

In [28]:
CNV_p = root_p / 'cont_Stand_PRS_SCZ_mc.tsv'
nlp.view_img(CNV_brain_img, threshold=0.003, vmax=0.1, title="PGS SZ",cmap=plt.cm.seismic)

/Users/Clara/anaconda3/lib/python3.6/site-packages/nilearn/reporting/html_document.py:60: UserWarning: It seems you have created more than 10 nilearn views. As each view uses dozens of megabytes of RAM, you might want to delete some of them.
  MAX_IMG_VIEWS_BEFORE_WARNING))
Out[28]:
In [29]:
CNV_p = root_p / 'cont_Stand_PRS_ASD_mc.tsv'
nlp.view_img(CNV_brain_img, threshold=0.003, vmax=0.1, title="PGS ASD",cmap=plt.cm.seismic)

/Users/Clara/anaconda3/lib/python3.6/site-packages/nilearn/reporting/html_document.py:60: UserWarning: It seems you have created more than 10 nilearn views. As each view uses dozens of megabytes of RAM, you might want to delete some of them.
  MAX_IMG_VIEWS_BEFORE_WARNING))
Out[29]:
In [30]:
CNV_p = root_p / 'cont_Stand_PRS_MDD_mc.tsv'
nlp.view_img(CNV_brain_img, threshold=0.003, vmax=0.1, title="PGS MDD",cmap=plt.cm.seismic)

/Users/Clara/anaconda3/lib/python3.6/site-packages/nilearn/reporting/html_document.py:60: UserWarning: It seems you have created more than 10 nilearn views. As each view uses dozens of megabytes of RAM, you might want to delete some of them.
  MAX_IMG_VIEWS_BEFORE_WARNING))
Out[30]:
In [31]:
CNV_p = root_p / 'cont_Stand_PRS_newCDG2_ukbb_mc.tsv'
nlp.view_img(CNV_brain_img, threshold=0.003, vmax=0.1, title="PGS Cross Disorder",cmap=plt.cm.seismic)

/Users/Clara/anaconda3/lib/python3.6/site-packages/nilearn/reporting/html_document.py:60: UserWarning: It seems you have created more than 10 nilearn views. As each view uses dozens of megabytes of RAM, you might want to delete some of them.
  MAX_IMG_VIEWS_BEFORE_WARNING))
Out[31]: